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#1 Re: rf-cloning troubles » Secondary PCR transformation not working » 2021-02-14 15:34:42

*I plated the entire transformation reaction on a single plate.

#2 Re: rf-cloning troubles » Secondary PCR transformation not working » 2021-02-14 15:33:38

Hi Steve,

Thank you so much. I use XL1 competent cells made in our lab for the transformation. We use them for all our cloning and a positive control transformation usually gives us a lawn growth. For example, the parent plasmid was cloned using golden gate assemble with 100 ng of plasmid and I had several (~50) colonies even with just 10% of the transformation plated. I could borrow comp cells from another lab to try though.
The PCR conditions I am using are exactly as described in the project link-
121 ng Parent plasmid, 150 ng insert
4 uL phusion buffer, 0.4 10 mM dNTPs and 0.2 uL phusion pol made to a total of 20 uL
2-step : 98 30s, 98 8s, 72 3:38 min (15 cycles) and 72 5 min final extension.
3 step : additional annealing at 60 for 20s

#3 rf-cloning troubles » Secondary PCR transformation not working » 2021-02-13 20:30:33

janhavi23
Replies: 4

Hello!

My project id is https://www.rf-cloning.org/rf_cloning_project.php?proj_id=970adea87a9e2d1e58c546c5a093315d

I have tried both the 2-step and 3-step PCR method with Phusion polymerase and annealing of 60C for the 3-step method.

Haven't gotten any colonies. I would be grateful for any suggestions!

I am going to try a fresh primary pcr and a lower annealing temperature as of now.

Thank you!

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